MINE: Maximal Information-based Nonparametric Exploration

Usage Instructions

MINE’s parameters

The following is a non-comprehensive list of MINE’s input parameters and their default values. The complete list is available as a pdf.


java -jar MINE.jar Spellman.csv 0 cv=0.7
will run the Java version of MINE on the file 'Spellman.csv'. The only variable pairs that will be analyzed are the first variable against the rest of the variables. A variable pair will be ignored if fewer than 70% of the records have values for both the variables in question. Try executing this line after dowloading the gene expression data set available on our site and saving it with the name 'Spellman.csv' into the same folder as MINE.jar.